Computing Molecular Potential Energy Surface with DIET
Identifieur interne : 006541 ( Main/Exploration ); précédent : 006540; suivant : 006542Computing Molecular Potential Energy Surface with DIET
Auteurs : Emmanuel Jeannot [France] ; Gerard Monard [France]Source :
Abstract
New developments in the field of theoretical chemistry require the computation of numerous Molecular Potential Energy Surfaces (PESs) to generate adequate quantum force field parameters. Because workstations alone cannot fulfill the requirements of these modern chemical advances, we present in this paper how we have tackled this problem using several up-to-date computer science technology such as grid-computing middleware, molecular databases, script interfacing, etc. An example on the optimization of semiempirical parameters for water shows the potential power of our approach and the benefit theoretical chemistry can gain with it.
Url:
Affiliations:
- France
- Grand Est, Lorraine (région)
- Metz, Nancy
- Institut national polytechnique de Lorraine, Université Nancy 2, Université de Lorraine
Links toward previous steps (curation, corpus...)
- to stream Hal, to step Corpus: 001774
- to stream Hal, to step Curation: 001774
- to stream Hal, to step Checkpoint: 004973
- to stream Main, to step Merge: 006868
- to stream Main, to step Curation: 006541
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Computing Molecular Potential Energy Surface with DIET</title>
<author><name sortKey="Jeannot, Emmanuel" sort="Jeannot, Emmanuel" uniqKey="Jeannot E" first="Emmanuel" last="Jeannot">Emmanuel Jeannot</name>
<affiliation wicri:level="1"><hal:affiliation type="researchteam" xml:id="struct-2346" status="OLD"><idno type="RNSR">200718299P</idno>
<orgName>Algorithms for the Grid</orgName>
<orgName type="acronym">ALGORILLE</orgName>
<desc><address><country key="FR"></country>
</address>
</desc>
<listRelation><relation active="#struct-160" type="direct"></relation>
<relation name="UMR7503" active="#struct-441569" type="indirect"></relation>
<relation active="#struct-300009" type="indirect"></relation>
<relation active="#struct-300291" type="indirect"></relation>
<relation active="#struct-300292" type="indirect"></relation>
<relation active="#struct-300293" type="indirect"></relation>
<relation active="#struct-2496" type="direct"></relation>
</listRelation>
<tutelles><tutelle active="#struct-160" type="direct"><org type="laboratory" xml:id="struct-160" status="OLD"><orgName>Laboratoire Lorrain de Recherche en Informatique et ses Applications</orgName>
<orgName type="acronym">LORIA</orgName>
<desc><address><addrLine>Campus Scientifique BP 239 54506 Vandoeuvre-lès-Nancy Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.loria.fr</ref>
</desc>
<listRelation><relation name="UMR7503" active="#struct-441569" type="direct"></relation>
<relation active="#struct-300009" type="direct"></relation>
<relation active="#struct-300291" type="direct"></relation>
<relation active="#struct-300292" type="direct"></relation>
<relation active="#struct-300293" type="direct"></relation>
</listRelation>
</org>
</tutelle>
<tutelle name="UMR7503" active="#struct-441569" type="indirect"><org type="institution" xml:id="struct-441569" status="VALID"><idno type="ISNI">0000000122597504</idno>
<idno type="IdRef">02636817X</idno>
<orgName>Centre National de la Recherche Scientifique</orgName>
<orgName type="acronym">CNRS</orgName>
<date type="start">1939-10-19</date>
<desc><address><country key="FR"></country>
</address>
<ref type="url">http://www.cnrs.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300009" type="indirect"><org type="institution" xml:id="struct-300009" status="VALID"><orgName>Institut National de Recherche en Informatique et en Automatique</orgName>
<orgName type="acronym">Inria</orgName>
<desc><address><addrLine>Domaine de VoluceauRocquencourt - BP 10578153 Le Chesnay Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/en/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300291" type="indirect"><org type="institution" xml:id="struct-300291" status="OLD"><orgName>Université Henri Poincaré - Nancy 1</orgName>
<orgName type="acronym">UHP</orgName>
<date type="end">2011-12-31</date>
<desc><address><addrLine>24-30 rue Lionnois, BP 60120, 54 003 NANCY cedex, France</addrLine>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300292" type="indirect"><org type="institution" xml:id="struct-300292" status="OLD"><orgName>Université Nancy 2</orgName>
<date type="end">2011-12-31</date>
<desc><address><addrLine>91 avenue de la Libération, BP 454, 54001 Nancy cedex</addrLine>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300293" type="indirect"><org type="institution" xml:id="struct-300293" status="OLD"><orgName>Institut National Polytechnique de Lorraine</orgName>
<orgName type="acronym">INPL</orgName>
<date type="end">2011-12-31</date>
<desc><address><country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-2496" type="direct"><org type="laboratory" xml:id="struct-2496" status="OLD"><orgName>INRIA Lorraine</orgName>
<desc><address><addrLine>615 rue du Jardin Botanique 54600 Villers-lès-Nancy</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/centre-de-recherche-inria/nancy-grand-est</ref>
</desc>
<listRelation><relation active="#struct-300009" type="direct"></relation>
</listRelation>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
<country>France</country>
<placeName><settlement type="city">Nancy</settlement>
<region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
</placeName>
<orgName type="university">Université Nancy 2</orgName>
<orgName type="institution" wicri:auto="newGroup">Université de Lorraine</orgName>
<placeName><settlement type="city">Nancy</settlement>
<region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
</placeName>
<orgName type="university">Institut national polytechnique de Lorraine</orgName>
<orgName type="institution" wicri:auto="newGroup">Université de Lorraine</orgName>
</affiliation>
</author>
<author><name sortKey="Monard, Gerard" sort="Monard, Gerard" uniqKey="Monard G" first="Gerard" last="Monard">Gerard Monard</name>
<affiliation wicri:level="1"><hal:affiliation type="laboratory" xml:id="struct-162285" status="VALID"><idno type="IdRef">166895385</idno>
<idno type="RNSR">199712611A</idno>
<idno type="IdUnivLorraine">[UL]RPH--</idno>
<orgName>Structure et Réactivité des Systèmes Moléculaires Complexes</orgName>
<orgName type="acronym">SRSMC</orgName>
<date type="start">2012-01-01</date>
<desc><address><addrLine>Université de Lorraine, Faculté des Sciences et Techniques, BP 70239, 54506 Vandoeuvre les Nancy Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.srsmc.univ-lorraine.fr/</ref>
</desc>
<listRelation><relation name="UMR7565" active="#struct-441569" type="direct"></relation>
<relation active="#struct-413289" type="direct"></relation>
</listRelation>
<tutelles><tutelle name="UMR7565" active="#struct-441569" type="direct"><org type="institution" xml:id="struct-441569" status="VALID"><idno type="ISNI">0000000122597504</idno>
<idno type="IdRef">02636817X</idno>
<orgName>Centre National de la Recherche Scientifique</orgName>
<orgName type="acronym">CNRS</orgName>
<date type="start">1939-10-19</date>
<desc><address><country key="FR"></country>
</address>
<ref type="url">http://www.cnrs.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-413289" type="direct"><org type="institution" xml:id="struct-413289" status="VALID"><idno type="IdRef">157040569</idno>
<idno type="IdUnivLorraine">[UL]100--</idno>
<orgName>Université de Lorraine</orgName>
<orgName type="acronym">UL</orgName>
<date type="start">2012-01-01</date>
<desc><address><addrLine>34 cours Léopold - CS 25233 - 54052 Nancy cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.univ-lorraine.fr/</ref>
</desc>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
<country>France</country>
<placeName><settlement type="city">Nancy</settlement>
<settlement type="city">Metz</settlement>
<region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
</placeName>
<orgName type="university">Université de Lorraine</orgName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">HAL</idno>
<idno type="RBID">Hal:inria-00000286</idno>
<idno type="halId">inria-00000286</idno>
<idno type="halUri">https://hal.inria.fr/inria-00000286</idno>
<idno type="url">https://hal.inria.fr/inria-00000286</idno>
<date when="2005">2005</date>
<idno type="wicri:Area/Hal/Corpus">001774</idno>
<idno type="wicri:Area/Hal/Curation">001774</idno>
<idno type="wicri:Area/Hal/Checkpoint">004973</idno>
<idno type="wicri:explorRef" wicri:stream="Hal" wicri:step="Checkpoint">004973</idno>
<idno type="wicri:Area/Main/Merge">006868</idno>
<idno type="wicri:Area/Main/Curation">006541</idno>
<idno type="wicri:Area/Main/Exploration">006541</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Computing Molecular Potential Energy Surface with DIET</title>
<author><name sortKey="Jeannot, Emmanuel" sort="Jeannot, Emmanuel" uniqKey="Jeannot E" first="Emmanuel" last="Jeannot">Emmanuel Jeannot</name>
<affiliation wicri:level="1"><hal:affiliation type="researchteam" xml:id="struct-2346" status="OLD"><idno type="RNSR">200718299P</idno>
<orgName>Algorithms for the Grid</orgName>
<orgName type="acronym">ALGORILLE</orgName>
<desc><address><country key="FR"></country>
</address>
</desc>
<listRelation><relation active="#struct-160" type="direct"></relation>
<relation name="UMR7503" active="#struct-441569" type="indirect"></relation>
<relation active="#struct-300009" type="indirect"></relation>
<relation active="#struct-300291" type="indirect"></relation>
<relation active="#struct-300292" type="indirect"></relation>
<relation active="#struct-300293" type="indirect"></relation>
<relation active="#struct-2496" type="direct"></relation>
</listRelation>
<tutelles><tutelle active="#struct-160" type="direct"><org type="laboratory" xml:id="struct-160" status="OLD"><orgName>Laboratoire Lorrain de Recherche en Informatique et ses Applications</orgName>
<orgName type="acronym">LORIA</orgName>
<desc><address><addrLine>Campus Scientifique BP 239 54506 Vandoeuvre-lès-Nancy Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.loria.fr</ref>
</desc>
<listRelation><relation name="UMR7503" active="#struct-441569" type="direct"></relation>
<relation active="#struct-300009" type="direct"></relation>
<relation active="#struct-300291" type="direct"></relation>
<relation active="#struct-300292" type="direct"></relation>
<relation active="#struct-300293" type="direct"></relation>
</listRelation>
</org>
</tutelle>
<tutelle name="UMR7503" active="#struct-441569" type="indirect"><org type="institution" xml:id="struct-441569" status="VALID"><idno type="ISNI">0000000122597504</idno>
<idno type="IdRef">02636817X</idno>
<orgName>Centre National de la Recherche Scientifique</orgName>
<orgName type="acronym">CNRS</orgName>
<date type="start">1939-10-19</date>
<desc><address><country key="FR"></country>
</address>
<ref type="url">http://www.cnrs.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300009" type="indirect"><org type="institution" xml:id="struct-300009" status="VALID"><orgName>Institut National de Recherche en Informatique et en Automatique</orgName>
<orgName type="acronym">Inria</orgName>
<desc><address><addrLine>Domaine de VoluceauRocquencourt - BP 10578153 Le Chesnay Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/en/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300291" type="indirect"><org type="institution" xml:id="struct-300291" status="OLD"><orgName>Université Henri Poincaré - Nancy 1</orgName>
<orgName type="acronym">UHP</orgName>
<date type="end">2011-12-31</date>
<desc><address><addrLine>24-30 rue Lionnois, BP 60120, 54 003 NANCY cedex, France</addrLine>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300292" type="indirect"><org type="institution" xml:id="struct-300292" status="OLD"><orgName>Université Nancy 2</orgName>
<date type="end">2011-12-31</date>
<desc><address><addrLine>91 avenue de la Libération, BP 454, 54001 Nancy cedex</addrLine>
<country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-300293" type="indirect"><org type="institution" xml:id="struct-300293" status="OLD"><orgName>Institut National Polytechnique de Lorraine</orgName>
<orgName type="acronym">INPL</orgName>
<date type="end">2011-12-31</date>
<desc><address><country key="FR"></country>
</address>
</desc>
</org>
</tutelle>
<tutelle active="#struct-2496" type="direct"><org type="laboratory" xml:id="struct-2496" status="OLD"><orgName>INRIA Lorraine</orgName>
<desc><address><addrLine>615 rue du Jardin Botanique 54600 Villers-lès-Nancy</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.inria.fr/centre-de-recherche-inria/nancy-grand-est</ref>
</desc>
<listRelation><relation active="#struct-300009" type="direct"></relation>
</listRelation>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
<country>France</country>
<placeName><settlement type="city">Nancy</settlement>
<region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
</placeName>
<orgName type="university">Université Nancy 2</orgName>
<orgName type="institution" wicri:auto="newGroup">Université de Lorraine</orgName>
<placeName><settlement type="city">Nancy</settlement>
<region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
</placeName>
<orgName type="university">Institut national polytechnique de Lorraine</orgName>
<orgName type="institution" wicri:auto="newGroup">Université de Lorraine</orgName>
</affiliation>
</author>
<author><name sortKey="Monard, Gerard" sort="Monard, Gerard" uniqKey="Monard G" first="Gerard" last="Monard">Gerard Monard</name>
<affiliation wicri:level="1"><hal:affiliation type="laboratory" xml:id="struct-162285" status="VALID"><idno type="IdRef">166895385</idno>
<idno type="RNSR">199712611A</idno>
<idno type="IdUnivLorraine">[UL]RPH--</idno>
<orgName>Structure et Réactivité des Systèmes Moléculaires Complexes</orgName>
<orgName type="acronym">SRSMC</orgName>
<date type="start">2012-01-01</date>
<desc><address><addrLine>Université de Lorraine, Faculté des Sciences et Techniques, BP 70239, 54506 Vandoeuvre les Nancy Cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.srsmc.univ-lorraine.fr/</ref>
</desc>
<listRelation><relation name="UMR7565" active="#struct-441569" type="direct"></relation>
<relation active="#struct-413289" type="direct"></relation>
</listRelation>
<tutelles><tutelle name="UMR7565" active="#struct-441569" type="direct"><org type="institution" xml:id="struct-441569" status="VALID"><idno type="ISNI">0000000122597504</idno>
<idno type="IdRef">02636817X</idno>
<orgName>Centre National de la Recherche Scientifique</orgName>
<orgName type="acronym">CNRS</orgName>
<date type="start">1939-10-19</date>
<desc><address><country key="FR"></country>
</address>
<ref type="url">http://www.cnrs.fr/</ref>
</desc>
</org>
</tutelle>
<tutelle active="#struct-413289" type="direct"><org type="institution" xml:id="struct-413289" status="VALID"><idno type="IdRef">157040569</idno>
<idno type="IdUnivLorraine">[UL]100--</idno>
<orgName>Université de Lorraine</orgName>
<orgName type="acronym">UL</orgName>
<date type="start">2012-01-01</date>
<desc><address><addrLine>34 cours Léopold - CS 25233 - 54052 Nancy cedex</addrLine>
<country key="FR"></country>
</address>
<ref type="url">http://www.univ-lorraine.fr/</ref>
</desc>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
<country>France</country>
<placeName><settlement type="city">Nancy</settlement>
<settlement type="city">Metz</settlement>
<region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
</placeName>
<orgName type="university">Université de Lorraine</orgName>
</affiliation>
</author>
</analytic>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">New developments in the field of theoretical chemistry require the computation of numerous Molecular Potential Energy Surfaces (PESs) to generate adequate quantum force field parameters. Because workstations alone cannot fulfill the requirements of these modern chemical advances, we present in this paper how we have tackled this problem using several up-to-date computer science technology such as grid-computing middleware, molecular databases, script interfacing, etc. An example on the optimization of semiempirical parameters for water shows the potential power of our approach and the benefit theoretical chemistry can gain with it.</div>
</front>
</TEI>
<affiliations><list><country><li>France</li>
</country>
<region><li>Grand Est</li>
<li>Lorraine (région)</li>
</region>
<settlement><li>Metz</li>
<li>Nancy</li>
</settlement>
<orgName><li>Institut national polytechnique de Lorraine</li>
<li>Université Nancy 2</li>
<li>Université de Lorraine</li>
</orgName>
</list>
<tree><country name="France"><region name="Grand Est"><name sortKey="Jeannot, Emmanuel" sort="Jeannot, Emmanuel" uniqKey="Jeannot E" first="Emmanuel" last="Jeannot">Emmanuel Jeannot</name>
</region>
<name sortKey="Monard, Gerard" sort="Monard, Gerard" uniqKey="Monard G" first="Gerard" last="Monard">Gerard Monard</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Lorraine/explor/InforLorV4/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 006541 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 006541 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Lorraine |area= InforLorV4 |flux= Main |étape= Exploration |type= RBID |clé= Hal:inria-00000286 |texte= Computing Molecular Potential Energy Surface with DIET }}
This area was generated with Dilib version V0.6.33. |